Required Fields

Field Type Allowed Values Default Value
model.filename string [ <filename> '.mat' ] N/A
model.resolution 1x3 double array any double N/A

Default Fields

protein.type string ('vesicle') 'vesicle' >>>>>>> master protein.cytonuclearflag string ('cyto','nuc','all') 'cyto' verbose boolean (True,False) True debug boolean (True,False) False model.proteinUpsampleZ double any double [] masks string any string [] display boolean (True,False) False train.flag string ('all','nuclear','framework') 'all' preprocessing boolean (True,False) True model.diffeomorphic.use_distance_matrix_completion boolean (True,False) True model.diffeomorphic.minimum_relative_semidiameter double any positive double 1/4 model.diffeomorphic.maximum_relative_semidiameter double any positive double 2/3 model.diffeomorphic.generate_cycle boolean (True,False) true model.diffeomorphic.useCurrentResults boolean (True,False) false model.diffeomorphic.tempdir string any string [param.tempparent filesep ‘diffeomorphic’] model.diffeomorphic.downsample 1x1 or 1x3 double array any double max(param.model.resolution)./param.model.resolution model.diffeomorphic.com_align boolean (True,False) True model.diffeomorphic.number_windows integer any positive integer less than the largest image dimension largest dimension of the smallest image ============================ ================== ====================================== =========================

Optional Fields

Field Type Allowed Values Default Value
model.name string any string []
model.id string any string []
nucleus.name string any string []
nucleus.id string any string []
cell.name string any string []
cell.id string any string []
cell.model string any string []
protein.name string any string []
protein.id string any string []
protein.class string any string []
documentation.author string any string []
documentation.email string any string []
documentation.description string any string []