Required Fields¶
Field | Type | Allowed Values | Default Value |
---|---|---|---|
model.filename |
string | [ <filename> '.mat' ] |
N/A |
model.resolution |
1x3 double array | any double | N/A |
Default Fields¶
protein.type
string ('vesicle')
'vesicle'
>>>>>>> master
protein.cytonuclearflag
string ('cyto','nuc','all')
'cyto'
verbose
boolean (True,False)
True
debug
boolean (True,False)
False
model.proteinUpsampleZ
double any double []
masks
string any string []
display
boolean (True,False)
False
train.flag
string ('all','nuclear','framework')
'all'
preprocessing
boolean (True,False)
True
model.diffeomorphic.use_distance_matrix_completion
boolean (True,False)
True
model.diffeomorphic.minimum_relative_semidiameter
double any positive double 1/4
model.diffeomorphic.maximum_relative_semidiameter
double any positive double 2/3
model.diffeomorphic.generate_cycle
boolean (True,False)
true
model.diffeomorphic.useCurrentResults
boolean (True,False)
false
model.diffeomorphic.tempdir
string any string [param.tempparent filesep ‘diffeomorphic’]
model.diffeomorphic.downsample
1x1 or 1x3 double array any double max(param.model.resolution)./param.model.resolution
model.diffeomorphic.com_align
boolean (True,False)
True
model.diffeomorphic.number_windows
integer any positive integer less than the largest image dimension largest dimension of the smallest image
============================ ================== ====================================== =========================
Optional Fields¶
Field | Type | Allowed Values | Default Value |
---|---|---|---|
model.name |
string | any string | [] |
model.id |
string | any string | [] |
nucleus.name |
string | any string | [] |
nucleus.id |
string | any string | [] |
cell.name |
string | any string | [] |
cell.id |
string | any string | [] |
cell.model |
string | any string | [] |
protein.name |
string | any string | [] |
protein.id |
string | any string | [] |
protein.class |
string | any string | [] |
documentation.author |
string | any string | [] |
documentation.email |
string | any string | [] |
documentation.description |
string | any string | [] |