CellOrganizer v2.7.1

Release Highlights

Features

• Created method slml2info to replace model2info. The method creates a report with useful information from a model file. Method writes report with Matlab Publisher. When method is deployed, then it generates a report in Markdown.
• Created method slml2report. The method creates a report comparing two model files. Method writes report with Matlab Publisher. When method is deployed, then it generates a report in Markdown.
• Created demos demo2D08 and demo2D09 to show how to make a report from a PCA framework model.

Enhancements

• Main methods slml2img, slml2info, slml2report and img2slml have been optimized for Matlab Compiler for release with CellOrganizer for Docker.

Fixes

• Fixed problem with demo3D46. Unable to synthesize image from CSGO model when combined with a vesicle model.

Downloads

• CellOrganizer v2.7.1 Compressed Source Code [484 MB]
• CellOrganizer v2.7.1 Compressed Source Code + Image Collection [9.2 GB]

Documentation

• To read the documentation online, click here.

Requirements

• Matlab 2016b or newer
• Bioinformatics Toolbox
• Computer Vision System Toolbox
• Control System Toolbox
• Curve Fitting Toolbox
• Image Processing Toolbox
• Mapping Toolbox
• Optimization Toolbox
• Robust Control Toolbox
• Signal Processing Toolbox
• Simulink
• Simulink Design Optimization
• Statistics and Machine Learning Toolbox
• System Identification Toolbox
• Wavelet Toolbox

Validating Suite

CellOrganizer releases for the 2.0 family are continuously tested using a set of

• public tests using the Matlab Unit Testing Framework
• private tests for compatibility with old releases of Matlab

Compatibility

CellOrganizer releases for the 2.0 family have been tested on

• Matlab 2016b/Ubuntu 12.04
• Matlab 2016b/MacOSX El Capitan