CellOrganizer v2.8.1

Release Highlights

Fixes

• Display shape space when dataset field is not present or empty.
• Generation of watertight SBML Spatial output has been corrected for translation errors.

Enhancements

• The following models have been rebuilt using this version of CellOrganizer. Updated models can be found in the model repository.
  • 2D HeLa diffeomorphic framework
  • 2D HeLa PCA framework
  • 2D HeLa classic framework
• CellOrganizer for Galaxy now Galaxy server v19.05

Downloads

• CellOrganizer v2.8.1 Compressed Source Code [784 MB]
• CellOrganizer v2.8.1 Compressed Source Code + Image Collection [9.2 GB]

Documentation

• To read the documentation online, click here.

Requirements

• Matlab 2016b or newer
• Bioinformatics Toolbox
• Computer Vision System Toolbox
• Control System Toolbox
• Curve Fitting Toolbox
• Image Processing Toolbox
• Mapping Toolbox
• Optimization Toolbox
• Robust Control Toolbox
• Signal Processing Toolbox
• Simulink
• Simulink Design Optimization
• Statistics and Machine Learning Toolbox
• System Identification Toolbox
• Wavelet Toolbox

Validating Suite

CellOrganizer releases for the 2.0 family are continuously tested using a set of

• public tests using the Matlab Unit Testing Framework
• private tests for compatibility with old releases of Matlab

Compatibility

CellOrganizer releases for the 2.8+ family have been tested on

• Matlab 2017b/Ubuntu 12.04
• Matlab 2017b/MacOSX El Capitan