CellOrganizer Documentation

Contents:

• Introduction
• Disclaimer
• About this document
• CellOrganizer
  • About CellOrganizer
  • Installing CellOrganizer locally
  • Installing CellOrganizer on a HPC
  • CellOrganizer in 45 Minutes
• CellOrganizer for Docker
  • About CellOrganizer for Docker
  • Installing CellOrganizer for Docker
  • Running CellOrganizer for Docker through Jupyter-Notebook
• CellOrganizer for Singularity
  • About CellOrganizer for Singularity
  • Installing CellOrganizer for Singularity
  • Running CellOrganizer for Singularity
• CellOrganizer for Galaxy
  • About CellOrganizer for Galaxy
  • Using Galaxy
  • Using CellOrganizer for Galaxy
  • CellOrganizer for Galaxy Tutorial
• Demos
  • 2D/3D Demos
  • Demos Summary Table
  • Brief Descriptions
• Additional Information
  • Model classes and types
  • Reproducing Figures from Research Articles
  • OME-TIFF
  • SBML Spatial Level 3
  • T cell models
• Main Functions
  • img2slml
  • slml2info
  • slml2img
  • slml2report
  • slml2slml