Model Repository

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This table lists all the models that have been officially released with CellOrganizer.

File name Size Version Dim Cell Framework Framework type Pattern(s) Pattern class Pattern type
cell_model_nuc_align.mat 724Mb 2.4.0 3D H1299 Cell diffeomorphic N/A N/A N/A
endosome.mat 32Kb 2.1.0 2D HeLa Cell and nucleus medial axis and ratio models endosomes vesicles GMM
lysosome.mat 32Kb 2.1.0 2D HeLa Cell and nucleus medial axis and ratio models lysosomes vesicles GMM
mitochondrion.mat 32Kb 2.1.0 2D HeLa Cell and nucleus medial axis and ratio models mitochondria vesicles GMM
nucleolus.mat 32Kb 2.1.0 2D HeLa Cell and nucleus medial axis and ratio models nucleoli vesicles GMM
3t3_model.mat 992Kb 2.1.0 3D 3T3 Cell and nucleus diffeomorphic lysosomes vesicles GMM
centro.mat 2.0Mb 2.1.0 3D HeLa Cell and nucleus cylindrical and ratio centrosomes vesicles GMM
hela_model.mat 5.4Mb 2.1.0 3D HeLa Cell and nucleus cylindrical and ratio lysosomes vesicles GMM
lamp2.mat 2.0Mb 2.1.0 3D HeLa Cell and nucleus cylindrical and ratio lysosomes vesicles GMM
mit.mat 2.0Mb 2.1.0 3D HeLa Cell and nucleus cylindrical and ratio mitochondria vesicles GMM
nuc.mat 2.0Mb 2.1.0 3D HeLa Cell and nucleus cylindrical and ratio nucleoli vesicles GMM
tfr.mat 2.0Mb 2.1.0 3D HeLa Cell and nucleus cylindrical and ratio endosomes vesicles GMM
tub.mat 2.0Mb 2.1.0 3D HeLa Cell and nucleus cylindrical and ratio microtubules vesicles GMM
hela_nuc_10_15_15.mat 71Mb 2.4.0 3D HeLa Nucleus diffeomorphic N/A N/A N/A
hela_cell_10_15_15.mat 75Mb 2.4.0 3D HeLa Cell diffeomorphic N/A N/A N/A
helamodel_9_16_15.mat 72Mb 2.4.0 3D HeLa Cell and nucleus diffeomorphic N/A N/A N/A

Support for CellOrganizer has been provided by grants GM075205, GM090033 and GM103712 from the National Institute of General Medical Sciences, grants MCB1121919 and MCB1121793 from the U.S. National Science Foundation, by a Forschungspreis from the Alexander von Humboldt Foundation, and by the Freiburg Institute for Advanced Studies.

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