CellOrganizer Version 2.7.1 The latest release of CellOrganizer now includes methods to generate reports from generative models. slml2info replaces model2info, and creates a report with useful information from a single generative model file. slml2report creates a report comparing two generative model files. Both methods write reports with Matlab Publisher, and...
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March 7, 2018 CellOrganizer Version 2.7.0 Release Highlights Features Included new model class/type constructive_geometry/half-ellipsoid Included new model class/type:framework/pca Included support for constructing models with OME.TIFF containing regions of interest   Enhancements img2slml now checks the combination of model class and type for every submodel before attempting to extract parameters from...
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June 26, 2017 CellOrganizer Version 2.6.0 Release Highlights SBML Spatial 3 Level 1 draft 0.90 support. Included a new synthesis output option named 'SBMLSpatial' that saves a synthetic image as an SBML instance. OME-TIFF support. Included a new synthesis output options named 'OMETIFF' that saves a synthetic image as an...
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September 12, 2016 CellOrganizer Version 2.5.2 Release Highlights Fixed issues with demo3D04 to demo3D07 due to nonexistent field. Centrosome model class and type has been update to reflect refactoring. Adjusted directory path for demo3D20. Updated 2D and 3D demos to match documentation. Fixed error in demo3D15 where synthetic images were...
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August 1, 2016 CellOrganizer Version 2.5.1 Release Highlights Models have been retrained and reflect CellOrganizer updated model structure. Demos have been updated to have consistent documentation. Issues in 3D diffeomorphic training have been resolved. Outputs corrected in demos. Some demos were refactored.
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June 1, 2016 CellOrganizer Version 2.5 New Release Highlights! Refactored the process by which images are converted to parameterizations to improve performance and facilitate adding new models. Refactored and simplified demos to make it easier to use as templates for user scripts. Included methods to download Murphy Lab 2D/3D HeLa...
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September 16, 2015 CellOrganizer Version 2.4 New Release Highlights! Demo recreating results found in G. R. Johnson, T.E. Buck, D. P. Sullivan, G. R. Rohde, and R. F. Murphy (2015) Joint Modeling of Cell and Nuclear Shape Variation. Molecular Biology of the Cell, in press (Special Issue on Quantitative Biology)....
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May 19, 2015 CellOrganizer Version 2.3 New Release Highlights! Microtubule model training.
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April 27, 2015 CellOrganizer Version 2.2 New Release Highlights! Optimized shape space calculation. Image size is no longer set to a default value and it will automatically determine the image size based on the model instance. Enhanced training demos to allow users to generate images from the trained models. Updated...
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