Home > cellorganizer > utilities > mathml2array.m

mathml2array

PURPOSE ^

MATHML2ARRAY Parses a MathML vector or array into a Matlab array.

SYNOPSIS ^

function array = mathml2array( mathml )

DESCRIPTION ^

MATHML2ARRAY Parses a MathML vector or array into a Matlab array.

CROSS-REFERENCE INFORMATION ^

This function calls: This function is called by:

SUBFUNCTIONS ^

SOURCE CODE ^

0001 function array = mathml2array( mathml )
0002 %MATHML2ARRAY Parses a MathML vector or array into a Matlab array.
0003 
0004 % Author: Ivan E. Cao-Berg (icaoberg@cmu.edu)
0005 % Created: May 8, 2007
0006 % Last Update: March 4, 2008
0007 %
0008 % Copyright (C) 2008 Center for Bioimage Informatics/Murphy Lab
0009 % Carnegie Mellon University
0010 %
0011 % This program is free software; you can redistribute it and/or modify
0012 % it under the terms of the GNU General Public License as published
0013 % by the Free Software Foundation; either version 2 of the License,
0014 % or (at your option) any later version.
0015 %
0016 % This program is distributed in the hope that it will be useful, but
0017 % WITHOUT ANY WARRANTY; without even the implied warranty of
0018 % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
0019 % General Public License for more details.
0020 %
0021 % You should have received a copy of the GNU General Public License
0022 % along with this program; if not, write to the Free Software
0023 % Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
0024 % 02110-1301, USA.
0025 %
0026 % For additional information visit http://murphylab.web.cmu.edu or
0027 % send email to murphy@cmu.edu
0028 
0029 if( nargin ~= 1 )
0030     error( 'CellOrganizer: Wrong number of input arguments' );
0031 else
0032     mathml = checkInputArguments( mathml );
0033 
0034     if( strfind( mathml{1}, 'vector' ) )
0035         array = vector( mathml );
0036     elseif( strfind( mathml{1}, 'array' ))
0037         array = matrix( mathml );
0038     else
0039         error( ['CellOrganizer: The information in the cell array is ' ...
0040             'not a supported MathML code.'] );
0041     end
0042 end
0043 end%mathml2array
0044 
0045 %--------------------------------------------------------------------------
0046 % HELPER METHODS
0047 function mathml = checkInputArguments( mathml )
0048 % CHECKINPUTARGUMENTS Checks the validity of the arguments of the main function
0049 if( ~isa( mathml, 'cell' ) )
0050     if( exist( mathml, 'file' ))
0051         mathml = textread( mathml, '%s', 'delimiter', '\n' );
0052     else
0053         error( 'CellOrganizer: Input must me a cell array or an XML file.' );
0054     end
0055 end
0056 end%checkInputArguments

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