CellOrganizer v2.5.0

Release Notes

• Refactored the process by which images are converted to parameterizations to improve performance and
  facilitate
  adding new models.
• Refactored and simplified demos to make it easier to use as templates for user scripts.
• Included methods to download Murphy Lab 2D/3D HeLa and 3D 3T3 image collections rather than downloading them
  each
  time demos run.
• Faster training and synthesis for 3D diffeomorphic models.
• Miscellaneous bug fixes and performance improvements.

Downloads

• CellOrganizer v2.5 Compressed Source Code [92 MB]
• CellOrganizer v2.5 Compressed Source Code + Image Collection [2.8 GB]

Documentation

• To read the documentation online, click here.

Requirements

• Matlab 2014b or newer
• Image Processing Toolbox for Matlab
• Statistics and Machine Learning Toolbox/Statistics Toolbox
• SymBiology Toolbox
• Curve Fitting Toolbox

Validating Suite

CellOrganizer releases for the 2.0 family are continuously tested using a set of

• public tests using the Matlab Unit Testing Framework
• private tests for compatibility with old releases of Matlab

Compatibility

CellOrganizer releases for the 2.0 family have been tested on

• Matlab 2015a/Ubuntu 12.04
• Matlab 2014a/Ubuntu 12.04
• Matlab 2016a/MacOSX El Capitan